Entry Detail


General Information

Database ID:exR0390507
RNA Name:ABCG2
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):88090150End Site(bp):88231628
External Links:ENSG00000118777



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
PTMS
chr12
6765516
6770952
+
AP2B1
chr17
35578046
35726413
+
PFN1
chr17
4945652
4949061
-
ACKR3
chr2
236567787
236582354
+
RFX5
chr1
151340640
151347357
-
SUPT16H
chr14
21351476
21384019
-
ABHD14A-ACY1
chr3
51974706
51989183
+
PLXNA2
chr1
208022242
208244384
-
PDXDC1
chr16
14974591
15139339
+
SDC2
chr8
96493813
96611790
+
MORN3
chr12
121648742
121672631
-
RARB
chr3
25174332
25597932
+
GNPDA1
chr5
141991749
142013041
-
TPT1
chr13
45333471
45341370
-
ZNRF2
chr7
30284597
30367689
+
PSMA5
chr1
109399042
109426448
-
ELF1
chr13
40931924
41061440
-
PDHB
chr3
58427630
58433857
-
PSMA4
chr15
78540405
78552417
+
CCND3
chr6
41934933
42050357
-
NELFA
chr4
1982717
2041903
-
RPS3
chr11
75399515
75422280
+
MTRNR2L12
chr3
96617188
96618236
-
NMD3
chr3
161104696
161253532
+
UGT3A2
chr5
36035021
36071358
-
AFF4
chr5
132875395
132963634
-
HNRNPA2B1
chr7
26173057
26201529
-
CDH1
chr16
68737292
68835541
+
SIPA1L1
chr14
71320449
71741229
+
RPL9
chr4
39452521
39458949
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC078881.1
chr4
177442519
177681381
+
AC069287.1
chr11
112967
125927
-
NR2F1-AS1
chr5
93360779
93585649
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA