Entry Detail


General Information

Database ID:exR0390548
RNA Name:ACAA1
RNA Type:mRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):38103129End Site(bp):38137242
External Links:ENSG00000060971



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
NDUFS8
chr11
68030617
68036644
+
SYNGR2
chr17
78168558
78173527
+
ATXN7L2
chr1
109483479
109492804
+
EIF3B
chr7
2354086
2380745
+
MARCKSL1
chr1
32333839
32336233
-
COTL1
chr16
84565596
84618078
-
ZNF331
chr19
53519527
53580269
+
RPS3
chr11
75399515
75422280
+
ICMT
chr1
6221193
6235972
-
ZFHX3
chr16
72782885
73891871
-
TPP1
chr11
6612768
6619448
-
RPL37A
chr2
216498825
216579180
+
TIMP2
chr17
78852977
78925387
-
ST6GAL1
chr3
186930502
187078553
+
DCTN5
chr16
23641466
23677472
+
PTOV1
chr19
49850735
49860744
+
KCTD13
chr16
29905012
29926236
-
TRAP1
chr16
3651639
3717553
-
CEP295NL
chr17
78870910
78903217
-
RPL11
chr1
23691742
23696835
+
LMNB1
chr5
126776623
126837020
+
MRPS27
chr5
72219409
72320646
-
DDX3Y
chrY
12904108
12920478
+
NPNT
chr4
105894775
106004027
+
MTRNR2L12
chr3
96617188
96618236
-
LIN28A
chr1
26410817
26429728
+
MPRIP
chr17
17042545
17217679
+
HDAC1
chr1
32292083
32333635
+
ZBTB40
chr1
22428838
22531157
+
RPS4X
chrX
72255679
72277248
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-4449
chr4
52712720
52712741
+
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA