Entry Detail


General Information

Database ID:exR0390549
RNA Name:ACAA2
RNA Type:mRNA
Chromosome:chr18
Starnd:-
Coordinate:
Start Site(bp):49782164End Site(bp):49813953
External Links:ENSG00000167315



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
DCAF5
chr14
69050881
69153150
-
PSMA6
chr14
35278633
35317493
+
RPL13
chr16
89560657
89566828
+
GSPT1
chr16
11868128
11916082
-
GABARAP
chr17
7240008
7242449
-
DNAJC1
chr10
21756548
22003769
-
LRRN1
chr3
3799431
3849834
+
SRSF7
chr2
38743599
38751494
-
MAPKAP1
chr9
125437393
125707234
-
CLDND1
chr3
98497912
98523066
-
AC120057.2
chr17
7240427
7244635
-
KDM5C
chrX
53191321
53225422
-
RAB6A
chr11
73675638
73761137
-
EXOC6B
chr2
72175984
72826041
-
CDC20
chr1
43358981
43363203
+
SF3B6
chr2
24067586
24076373
-
UBL5
chr19
9827892
9830115
+
MTRNR2L12
chr3
96617188
96618236
-
HACD4
chr9
20999509
21031640
-
RAN
chr12
130872037
130877678
+
RAD17
chr5
69369293
69414801
+
RPS6
chr9
19375715
19380236
-
REEP5
chr5
112876385
112922289
-
LRRFIP1
chr2
237627587
237813682
+
VASP
chr19
45506579
45526983
+
CAPN1
chr11
65180566
65212006
+
CKAP5
chr11
46743048
46846308
-
NTS
chr12
85874295
85882992
+
ERN1
chr17
64039142
64130819
-
PRDX6
chr1
173477330
173488815
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-492
chr12
94834427
94834449
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC026362.1
chr12
122975320
122982907
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA