Entry Detail


General Information

Database ID:exR0390564
RNA Name:ACAP3
RNA Type:mRNA
Chromosome:chr1
Starnd:-
Coordinate:
Start Site(bp):1292390End Site(bp):1309609
External Links:ENSG00000131584



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
IMP3
chr15
75639085
75648706
-
TAOK2
chr16
29973868
29992261
+
SDCBP
chr8
58552924
58582859
+
NUP62
chr19
49906825
49929763
-
ALG1
chr16
5033923
5087379
+
EEF2
chr19
3976056
3985463
-
S100A13
chr1
153618787
153631360
-
RUNX3
chr1
24899511
24965121
-
SLC15A4
chr12
128793194
128823958
-
HAND1
chr5
154474972
154478227
-
MTOR
chr1
11106535
11262551
-
SENP3
chr17
7561919
7571969
+
MIF
chr22
23894383
23895227
+
SLC7A5
chr16
87830023
87869507
-
MT-ND4
chrMT
10760
12137
+
DEPDC5
chr22
31753867
31908033
+
SLC27A2
chr15
50182196
50236385
+
XPO6
chr16
28097979
28211920
-
PCSK1N
chrX
48831096
48835610
-
KMT2B
chr19
35717973
35738878
+
MCM3AP
chr21
46235133
46286297
-
PFKM
chr12
48105139
48146404
+
TUBA4A
chr2
219249710
219278170
-
CLTC
chr17
59619689
59696956
+
PIK3C2B
chr1
204422628
204494724
-
TRIM7
chr5
181193924
181205293
-
HIRA
chr22
19330698
19447450
-
AURKAIP1
chr1
1373730
1375495
-
SETD1A
chr16
30957754
30984664
+
ZFHX4
chr8
76681239
76867281
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL157392.3
chr10
13631143
13668445
+
AL355075.4
chr14
20343048
20343685
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA