Entry Detail


General Information

Database ID:exR0390565
RNA Name:ACAT1
RNA Type:mRNA
Chromosome:chr11
Starnd:+
Coordinate:
Start Site(bp):108116695End Site(bp):108147603
External Links:ENSG00000075239



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ATP2A2
chr12
110280756
110351093
+
MTRNR2L8
chr11
10507894
10509186
-
TRIP10
chr19
6737925
6751530
+
NPEPPS
chr17
47522942
47623276
+
DAPK1
chr9
87497228
87708634
+
PSMB5
chr14
23016543
23035230
-
CCDC102A
chr16
57512181
57536571
-
FZD3
chr8
28494205
28574267
+
NCAM1
chr11
112961247
113278436
+
PRDX4
chrX
23664262
23686397
+
PSMD10
chrX
108084207
108091549
-
PGK1
chrX
77910739
78129295
+
HSP90AB1
chr6
44246166
44253888
+
NPIPB2
chr16
11927259
11976643
-
TXNRD1
chr12
104215779
104350307
+
MRPL47
chr3
179588285
179604649
-
AC010422.3
chr19
12643831
12648397
-
GHITM
chr10
84139509
84153568
+
POU3F3
chr2
104853287
104858574
+
RPS4X
chrX
72255679
72277248
-
DAP3
chr1
155687960
155739010
+
EEF1A1
chr6
73515750
73523797
-
GLI2
chr2
120735623
120992653
+
IER3IP1
chr18
47152834
47176364
-
RPLP1
chr15
69452814
69456205
+
ACTG1
chr17
81509971
81523847
-
IGFBP2
chr2
216632828
216664436
+
NUP205
chr7
135557917
135648757
+
ACTB
chr7
5527148
5563784
-
TXNDC16
chr14
52430596
52552522
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
MIR155HG
chr21
25561909
25575168
+
POLR2J4
chr7
43940895
44019175
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA