Entry Detail


General Information

Database ID:exR0390566
RNA Name:ACAT2
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):159762045End Site(bp):159779112
External Links:ENSG00000120437



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RIMS3
chr1
40620680
40665682
-
RPL13
chr16
89560657
89566828
+
ATP5MC2
chr12
53632726
53677408
-
TTF2
chr1
117060326
117107453
+
FAM83F
chr22
39994954
40043534
+
TMEM14C
chr6
10722915
10731129
+
PWP2
chr21
44107373
44131181
+
CINP
chr14
102341102
102362916
-
FKBP8
chr19
18531751
18544077
-
PFN1
chr17
4945652
4949061
-
HDAC11
chr3
13479724
13506424
+
RIOX1
chr14
73490933
73493394
+
HSF1
chr8
144291591
144314720
+
SLC7A3
chrX
70925579
70931125
-
RPS13
chr11
17074388
17077715
-
ALG12
chr22
49900229
49918438
-
SKIL
chr3
170357678
170396835
+
BTG1
chr12
92140278
92145846
-
FDPS
chr1
155308748
155320666
+
ZCCHC10
chr5
132996985
133026604
-
IFT27
chr22
36758202
36776256
-
SURF2
chr9
133356550
133361158
+
COX6B1
chr19
35648323
35658782
+
ZNF451
chr6
57086844
57170305
+
RPL30
chr8
98024851
98046469
-
MLYCD
chr16
83899115
83951445
+
HAUS4
chr14
22946228
22957161
-
RPL37
chr5
40825262
40835222
-
MTRNR2L11
chr1
237943724
237945275
-
KDM4A
chr1
43650149
43705518
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AD000090.1
chr19
35557956
35581954
+
AL158835.3
chr10
125707416
125749525
-
HCP5
chr6
31463170
31478936
+
PRNCR1
chr8
127079874
127092600
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA