Entry Detail


General Information

Database ID:exR0390567
RNA Name:ACBD3
RNA Type:mRNA
Chromosome:chr1
Starnd:-
Coordinate:
Start Site(bp):226144679End Site(bp):226186741
External Links:ENSG00000182827



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MTRNR2L12
chr3
96617188
96618236
-
SLC16A2
chrX
74421493
74533917
+
RPS24
chr10
78033760
78056813
+
NUSAP1
chr15
41320794
41381050
+
LRWD1
chr7
102464956
102473168
+
S1PR4
chr19
3172346
3180332
+
RSU1
chr10
16590611
16817463
-
RPL15
chr3
23916545
23924374
+
FOCAD
chr9
20658309
20995955
+
GPR176
chr15
39799008
39920266
-
RAPGEF1
chr9
131576770
131740074
-
UTP18
chr17
51260546
51297936
+
LIMCH1
chr4
41359607
41700044
+
ZNF224
chr19
44094339
44109886
+
TTC39C
chr18
23992773
24135610
+
IGFBP5
chr2
216672105
216695549
-
YTHDF1
chr20
63195429
63216139
-
RGS10
chr10
119499817
119542719
-
CFL1
chr11
65823022
65862026
-
TPT1
chr13
45333471
45341370
-
RASGRP2
chr11
64726911
64745456
-
ACLY
chr17
41866917
41930542
-
UQCRQ
chr5
132866630
132868847
+
ID4
chr6
19837370
19842197
+
CSNK1E
chr22
38290691
38318084
-
PUM1
chr1
30931506
31065991
-
ZBTB33
chrX
120250752
120258398
+
TSN
chr2
121737103
121767853
+
HK1
chr10
69269984
69401884
+
DNPEP
chr2
219373527
219400022
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009404.1
chr2
117833937
117841658
+
AC023908.2
chr15
39770559
39801333
-
AL022311.1
chr22
37876148
37895563
+
AL513314.2
chr1
222477252
222504622
-
MIR663AHG
chr20
26167817
26251546
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA