Entry Detail


General Information

Database ID:exR0390569
RNA Name:ACBD5
RNA Type:mRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):27195214End Site(bp):27242130
External Links:ENSG00000107897



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CDC42SE1
chr1
151050971
151070325
-
MAML3
chr4
139716753
140154184
-
TUBA1C
chr12
49188736
49274603
+
RPL13A
chr19
49487554
49492308
+
MAP4K2
chr11
64784918
64803241
-
PTCD1
chr7
99416739
99466163
-
ATP5MF-PTCD1
chr7
99419749
99466197
-
HSPA8
chr11
123057489
123063230
-
GGA2
chr16
23463542
23521995
-
TUBA1A
chr12
49184795
49189080
-
TMEM216
chr11
61392360
61398863
+
YLPM1
chr14
74763316
74859435
+
AMOT
chrX
112774503
112840815
-
IGF2
chr11
2129112
2141238
-
PLS1
chr3
142596393
142713664
+
DECR2
chr16
401858
412487
+
TPI1
chr12
6867119
6870948
+
RNF7
chr3
141738249
141747560
+
ENO1
chr1
8861000
8879190
-
RTN3
chr11
63681446
63759891
+
MYL12B
chr18
3261479
3278431
+
B2M
chr15
44711487
44718877
+
LRIG2
chr1
113073198
113132260
+
CKAP5
chr11
46743048
46846308
-
RPS24
chr10
78033760
78056813
+
GOT2
chr16
58707131
58734342
-
HIPK3
chr11
33256672
33357023
+
FTL
chr19
48965309
48966879
+
LCP1
chr13
46125920
46211871
-
NACA2
chr17
61590421
61591219
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-93-5p
chr7
100093815
100093837
-
hsa-miR-145-5p
chr5
149430661
149430683
+
hsa-miR-526b-5p
chr19
53694406
53694428
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC020916.1
chr19
13823880
13842928
-
AC132217.1
chr11
2129121
2129964
-
SNHG1
chr11
62851984
62855953
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA