Entry Detail


General Information

Database ID:exR0390576
RNA Name:ACER3
RNA Type:mRNA
Chromosome:chr11
Starnd:+
Coordinate:
Start Site(bp):76860867End Site(bp):77026797
External Links:ENSG00000078124



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SLC39A13
chr11
47407132
47416496
+
HLA-A
chr6
29941260
29945884
+
BANP
chr16
87949244
88077318
+
ARCN1
chr11
118572390
118603033
+
PPIB
chr15
64155812
64163205
-
NDUFC2-KCTD14
chr11
78016971
78079865
-
CCT2
chr12
69585426
69601570
+
PTRH2
chr17
59674636
59707626
-
TBC1D4
chr13
75283503
75482169
-
NDUFC2
chr11
78068297
78079862
-
KLHL7
chr7
23105758
23177914
+
EIF3C
chr16
28688558
28735730
+
DNAJB6
chr7
157335381
157417439
+
RPS10-NUDT3
chr6
34284887
34426071
-
RPS10
chr6
34417454
34426069
-
C22orf39
chr22
19351368
19448232
-
MRFAP1L1
chr4
6707701
6709865
-
SLC3A2
chr11
62856102
62888875
+
TSKU
chr11
76782251
76798153
+
DPH1
chr17
2030110
2043430
+
SYAP1
chrX
16719612
16765340
+
HNRNPH1
chr5
179614178
179634784
-
SHMT2
chr12
57229573
57234935
+
RPL27A
chr11
8682788
8714759
+
FAM3C
chr7
121348878
121396364
-
PRDX3
chr10
119167720
119178812
-
CNN2
chr19
1026586
1039068
+
NOTCH2
chr1
119911553
120100779
-
CDC42SE2
chr5
131245493
131398447
+
AC010422.3
chr19
12643831
12648397
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-27a-3p
chr19
13836447
13836467
-
hsa-miR-129-5p
chr7
128207876
128207896
+
hsa-miR-27b-3p
chr9
95085505
95085525
+
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA