Entry Detail


General Information

Database ID:exR0390595
RNA Name:ACOT8
RNA Type:mRNA
Chromosome:chr20
Starnd:-
Coordinate:
Start Site(bp):45841721End Site(bp):45857405
External Links:ENSG00000101473



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BAHD1
chr15
40439721
40468236
+
RPS14
chr5
150442635
150449739
-
C19orf53
chr19
13774456
13778773
+
B2M
chr15
44711487
44718877
+
CHST15
chr10
124007668
124093598
-
HAUS7
chrX
153447666
153495516
-
CANX
chr5
179678628
179731641
+
SRPK2
chr7
105110704
105399308
-
SZRD1
chr1
16352575
16398145
+
CCL3
chr17
36088256
36090169
-
HVCN1
chr12
110627841
110704950
-
MAP7D1
chr1
36155579
36180849
+
VMP1
chr17
59707192
59842255
+
NCF4
chr22
36860988
36878017
+
WBP1
chr2
74458400
74460891
+
SBK1
chr16
28259246
28323849
+
SLC16A1
chr1
112911847
112957013
-
ARPC4
chr3
9792495
9807726
+
CIC
chr19
42268537
42295797
+
PPP2R5C
chr14
101761798
101927989
+
CDK2
chr12
55966781
55972789
+
GCSAM
chr3
112120839
112133270
-
EP400
chr12
131949942
132080460
+
ABCD4
chr14
74285269
74303055
-
RPL27A
chr11
8682788
8714759
+
PYURF
chr4
88520998
88523776
-
SAP18
chr13
21140514
21149084
+
H6PD
chr1
9234775
9271337
+
NOP53
chr19
47745546
47757058
+
TRIM45
chr1
117111060
117122587
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
BX890604.2
chrX
3817528
3937855
-
MALAT1
chr11
65497688
65506516
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA