Entry Detail


General Information

Database ID:exR0390596
RNA Name:ACOT9
RNA Type:mRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):23701055End Site(bp):23766475
External Links:ENSG00000123130



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CALM2
chr2
47160083
47176921
-
NKX1-2
chr10
124445243
124450035
-
PKP3
chr11
392614
404908
+
GDI2
chr10
5765223
5842132
-
RPLP1
chr15
69452814
69456205
+
TTLL3
chr3
9808086
9855138
+
KPNA5
chr6
116681187
116741867
+
PKN2
chr1
88684222
88836255
+
PLEKHB2
chr2
131104847
131353709
+
AIP
chr11
67483026
67491103
+
MT-CO2
chrMT
7586
8269
+
NUP155
chr5
37288137
37371106
-
PIEZO1
chr16
88715338
88785220
-
N4BP2L2
chr13
32432417
32538885
-
OCLN
chr5
69492292
69558104
+
CEP55
chr10
93496612
93529092
+
HLA-C
chr6
31268749
31272130
-
PNPO
chr17
47941506
47949308
+
MYDGF
chr19
4641374
4670362
-
SSBP1
chr7
141738334
141787922
+
NECAP2
chr1
16440721
16460078
+
RPS16
chr19
39433137
39435949
-
HMGCS1
chr5
43287470
43313512
-
DICER1
chr14
95086228
95158010
-
ANKRD46
chr8
100509752
100559784
-
PCBP1
chr2
70087477
70089203
+
PHTF2
chr7
77798792
77957503
+
RGS1
chr1
192575763
192580024
+
ADNP
chr20
50888916
50931437
-
CD74
chr5
150400041
150412929
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
JPX
chrX
73944182
74070408
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA