Entry Detail


General Information

Database ID:exR0390601
RNA Name:ACP1
RNA Type:mRNA
Chromosome:chr2
Starnd:+
Coordinate:
Start Site(bp):264140End Site(bp):278283
External Links:ENSG00000143727



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
PIP4K2A
chr10
22534854
22714578
-
XPO6
chr16
28097979
28211920
-
UBP1
chr3
33388336
33441371
-
CST3
chr20
23626706
23638473
-
RPS4X
chrX
72255679
72277248
-
ENSA
chr1
150600851
150629612
-
PTOV1
chr19
49850735
49860744
+
SMC5
chr9
70258978
70354873
+
TUFM
chr16
28842411
28846348
-
DTD2
chr14
31446036
31457506
-
B2M
chr15
44711487
44718877
+
NUDT5
chr10
12165330
12196144
-
SCD
chr10
100347233
100364826
+
VSIG10
chr12
118063593
118136026
-
TBX6
chr16
30085793
30091887
-
AC009133.6
chr16
29812261
29820092
+
BORCS5
chr12
12357078
12471233
+
ARPC2
chr2
218217141
218254356
+
TOP2A
chr17
40388525
40417896
-
MT-CO1
chrMT
5904
7445
+
EIF3CL
chr16
28379579
28403879
-
EIF3H
chr8
116642130
116766925
-
POLH
chr6
43576185
43620523
+
TUBB
chr6
30720352
30725426
+
CHMP1A
chr16
89644435
89657721
-
MOB3A
chr19
2071036
2096673
-
LYRM4
chr6
5102593
5260939
-
TP53
chr17
7661779
7687550
-
ORMDL3
chr17
39921041
39927601
-
MSH2
chr2
47403067
47663146
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-let-7b-5p
chr22
46113691
46113712
+
hsa-let-7d-5p
chr9
94178841
94178862
+
hsa-let-7f-5p
chrX
53557246
53557267
-
hsa-miR-196a-5p
chr17
48632532
48632553
-
hsa-let-7g-5p
chr3
52268336
52268357
-
hsa-let-7i-5p
chr12
62603691
62603712
+
hsa-miR-151a-3p
chr8
140732587
140732607
-
hsa-miR-196b-5p
chr7
27169528
27169549
-
hsa-miR-519c-5p
chr19
53686484
53686505
+
hsa-miR-519b-5p
chr19
53695225
53695246
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC126365.1
chr17
20788071
20789584
+
AL139819.1
chr10
100335563
100346390
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA