Entry Detail


General Information

Database ID:exR0390602
RNA Name:ACP5
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):11574660End Site(bp):11579008
External Links:ENSG00000102575



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACTG1
chr17
81509971
81523847
-
AL669918.1
chr6
32813767
32838822
-
ATP5F1D
chr19
1241746
1244825
+
B2M
chr15
44711487
44718877
+
CCT3
chr1
156308968
156367873
-
CD226
chr18
69831158
69961803
-
COX4I1
chr16
85798633
85807068
+
COX6C
chr8
99873200
99893707
-
ENO1
chr1
8861000
8879190
-
GALNT6
chr12
51351247
51392867
-
HLA-B
chr6
31269491
31357188
-
IRAK1
chrX
154010506
154019902
-
LTA
chr6
31572054
31574324
+
NCAPD2
chr12
6493356
6531955
+
NME3
chr16
1770286
1771730
-
PFN1
chr17
4945652
4949061
-
PPP4R3B
chr2
55547292
55618880
-
PRR7
chr5
177446445
177456286
+
RBM33
chr7
155644451
155781485
+
RNASET2
chr6
166929504
166957191
-
RPL4
chr15
66498015
66524532
-
SLC25A6
chrX
1386152
1392113
-
SMAD2
chr18
47808957
47931146
-
SNRNP40
chr1
31259568
31296788
-
TAP2
chr6
32821833
32838770
-
TERF2IP
chr16
75647773
75761872
+
UBC
chr12
124911604
124917368
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
SNHG16
chr17
76557764
76565348
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA