Entry Detail


General Information

Database ID:exR0390689
RNA Name:ADAMTS1
RNA Type:mRNA
Chromosome:chr21
Starnd:-
Coordinate:
Start Site(bp):26835755End Site(bp):26845409
External Links:ENSG00000154734



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RBM39
chr20
35701347
35742312
-
KATNBL1
chr15
34140674
34210096
-
SCRN1
chr7
29920104
29990289
-
NPIPA8
chr16
18317942
18336736
-
HECTD4
chr12
112160188
112382439
-
MRPL38
chr17
75898643
75905413
-
IDH2
chr15
90083045
90102504
-
SEC31A
chr4
82818509
82901166
-
HNRNPCL2
chr1
13115488
13116854
-
TMEM259
chr19
1009648
1021179
-
RECQL5
chr17
75626845
75667189
-
TAX1BP3
chr17
3662895
3668679
-
MARK4
chr19
45079288
45305284
+
GPI
chr19
34359480
34402413
+
HCFC1
chrX
153947557
153971818
-
FAM13B
chr5
137937960
138051961
-
TAOK2
chr16
29973868
29992261
+
TM9SF3
chr10
96518110
96587452
-
MINDY4
chr7
30771417
30892387
+
KIF13A
chr6
17759183
17987635
-
SOX9
chr17
72121020
72126416
+
ATIC
chr2
215311956
215349773
+
RRM1
chr11
4094707
4138932
+
TMEM179B
chr11
62787402
62790400
+
UBE2W
chr8
73780097
73878910
-
GMPPB
chr3
49716844
49723951
-
EMC9
chr14
24138959
24141591
-
AC087289.3
chr17
75898645
75930129
-
SON
chr21
33543038
33577481
+
PIP4K2A
chr10
22534854
22714578
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC040160.2
chr16
67261108
67263784
+
GATA2-AS1
chr3
128489212
128502970
+
RMRP
chr9
35657751
35658018
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA