Entry Detail


General Information

Database ID:exR0390711
RNA Name:ADAMTSL4
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):150549369End Site(bp):150560937
External Links:ENSG00000143382



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BAG6
chr6
31639028
31652705
-
POLR2C
chr16
57462660
57472009
+
LMNA
chr1
156082573
156140089
+
EIF3L
chr22
37848868
37889407
+
NSD1
chr5
177133025
177300215
+
ZIC2
chr13
99981784
99986765
+
BST2
chr19
17402939
17405630
-
NENF
chr1
212432920
212446379
+
TAF1D
chr11
93729948
93784391
-
URM1
chr9
128371361
128392016
+
CNN2
chr19
1026586
1039068
+
PABPC1
chr8
100685816
100722809
-
ORC6
chr16
46689643
46698394
+
ZNF678
chr1
227563543
227677443
+
NFS1
chr20
35668052
35699355
-
FLNA
chrX
154348524
154374638
-
VPS4A
chr16
69311350
69326939
+
TIAL1
chr10
119571802
119597029
-
SMARCD2
chr17
63832081
63843065
-
ZDHHC18
chr1
26826688
26857604
+
UBE2V2
chr8
48008415
48064708
+
ANKFY1
chr17
4163821
4263995
-
FAR1
chr11
13668668
13732346
+
RANGAP1
chr22
41245611
41286251
-
SH3KBP1
chrX
19533977
19887600
-
SFPQ
chr1
35176378
35193145
-
EIF4H
chr7
74174245
74197101
+
ARF4
chr3
57571363
57598220
-
LIN28B
chr6
104936616
105083332
+
IGF2
chr11
2129112
2141238
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC132217.1
chr11
2129121
2129964
-
AP001372.2
chr11
74493366
74498533
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA