Entry Detail


General Information

Database ID:exR0390872
RNA Name:AK6
RNA Type:mRNA
Chromosome:chr5
Starnd:-
Coordinate:
Start Site(bp):69350984End Site(bp):69370013
External Links:ENSG00000085231



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL513165.2
chr9
37512547
37592469
-
BICC1
chr10
58512872
58831435
+
FBXO10
chr9
37510892
37576380
-
FOXP4
chr6
41546426
41602384
+
GLRX3
chr10
130136391
130184521
+
KPNA1
chr3
122421902
122514945
-
LTV1
chr6
143843338
143863812
+
NFS1
chr20
35668052
35699355
-
PPP2R1B
chr11
111726908
111766389
-
RAB12
chr18
8609437
8639382
+
RAB1A
chr2
65070696
65130331
-
RANBP9
chr6
13621498
13711835
-
RBMX
chrX
136848004
136880764
-
SNRPD2
chr19
45687454
45692569
-
TAF9
chr5
69364743
69370013
-
TJP1
chr15
29699367
29968865
-
USP1
chr1
62436297
62451804
+
WDFY4
chr10
48684876
48982956
+
WDR7
chr18
56651343
57036606
+
ZFAND5
chr9
72351413
72365235
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AD000090.1
chr19
35557956
35581954
+
AL138689.2
chr13
106491147
106521630
+
IQCH-AS1
chr15
67290636
67521844
-
SNHG3
chr1
28505980
28510892
+
WDR7-OT1
chr18
57027832
57038845
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA