Entry Detail


General Information

Database ID:exR0390916
RNA Name:ALCAM
RNA Type:mRNA
Chromosome:chr3
Starnd:+
Coordinate:
Start Site(bp):105366909End Site(bp):105576900
External Links:ENSG00000170017



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ZNF525
chr19
53365693
53392217
+
RPL34
chr4
108620566
108630412
+
EIF5A
chr17
7306999
7312463
+
OAZ1
chr19
2269509
2273490
+
MT-CO1
chrMT
5904
7445
+
SLC10A7
chr4
146253975
146521964
-
FBXO45
chr3
196568611
196589059
+
ZNF664
chr12
123971845
124015439
+
EIF3F
chr11
7970251
8001862
+
NUDT5
chr10
12165330
12196144
-
NOP56
chr20
2652593
2658393
+
CMTM6
chr3
32481312
32502852
-
POLR2E
chr19
1086574
1095380
-
FRAS1
chr4
78057323
78544269
+
VAMP3
chr1
7771296
7781432
+
ATP5MG
chr11
118401606
118431496
+
FKBP8
chr19
18531751
18544077
-
TMEM107
chr17
8172457
8176399
-
ADK
chr10
74151202
74709963
+
CYTIP
chr2
157414619
157488961
-
CDH3
chr16
68636189
68722616
+
KBTBD2
chr7
32868172
32894131
-
EIF3E
chr8
108201216
108435333
-
RPLP0
chr12
120196699
120201235
-
PRRC2B
chr9
131373636
131500197
+
RBM5
chr3
50088919
50119021
+
PPME1
chr11
74171267
74254703
+
BTG1
chr12
92140278
92145846
-
IGFBP2
chr2
216632828
216664436
+
SPRED1
chr15
38252836
38357249
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC024940.6
chr12
31280422
31280895
-
AD000090.1
chr19
35557956
35581954
+
LINC00992
chr5
117415509
117546298
+
MALAT1
chr11
65497688
65506516
+
PRNCR1
chr8
127079874
127092600
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA