Entry Detail


General Information

Database ID:exR0390918
RNA Name:ALDH18A1
RNA Type:mRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):95605941End Site(bp):95656711
External Links:ENSG00000059573



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
GTF3C2
chr2
27325849
27357034
-
MCM7
chr7
100092728
100101940
-
GABARAP
chr17
7240008
7242449
-
PTPRS
chr19
5158495
5340803
-
OPTN
chr10
13099449
13138308
+
HOXD3
chr2
176136612
176173102
+
ELL2
chr5
95885098
95961851
-
MTA2
chr11
62593214
62601865
-
HNRNPC
chr14
21209136
21269494
-
CCNF
chr16
2429394
2458854
+
PGAM1
chr10
97426191
97433444
+
HMGXB3
chr5
150000046
150053142
+
ARPC1B
chr7
99374249
99394816
+
HSPA5
chr9
125234853
125241343
-
CSDE1
chr1
114716913
114758676
-
MTG1
chr10
133394094
133422520
+
SRM
chr1
11054584
11060020
-
AKAP13
chr15
85380571
85749358
+
MRFAP1
chr4
6640091
6642745
+
E2F4
chr16
67192155
67198918
+
EEF2KMT
chr16
5084284
5097795
-
SCAMP2
chr15
74843730
74873365
-
LASP1
chr17
38869859
38921770
+
AHCY
chr20
34280268
34311802
-
ACAT2
chr6
159762045
159779112
+
TNC
chr9
115019575
115118257
-
CAMTA2
chr17
4967992
4987675
-
CIAO1
chr2
96266159
96274173
+
DDX24
chr14
94048287
94081212
-
SRRM2
chr16
2752626
2772538
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010319.3
chr19
17419305
17419774
-
AC016876.2
chr17
7581964
7584086
-
AL031595.3
chr22
44139365
44153626
+
FOXD2-AS1
chr1
47432133
47434641
-
LINC00667
chr18
5237826
5290608
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA