Entry Detail


General Information

Database ID:exR0391322
RNA Name:ARHGDIA
RNA Type:mRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):81867721End Site(bp):81871378
External Links:ENSG00000141522



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABI2
chr2
203328239
203447728
+
AC010132.3
chr7
42909273
42932174
-
AC011005.1
chr7
129126518
129130793
+
AC018512.1
chr15
43772617
43799133
-
AC020909.1
chr19
50415799
50428409
+
AC093525.2
chr16
2496032
2520218
+
AC120057.2
chr17
7240427
7244635
-
ACBD6
chr1
180269653
180502954
-
ACER3
chr11
76860867
77026797
+
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ADAR
chr1
154582057
154628013
-
ADORA2A
chr22
24417879
24442357
+
AGRN
chr1
1020120
1056118
+
AKT1
chr14
104769349
104795751
-
AKT1S1
chr19
49869033
49878459
-
ALAD
chr9
113386312
113401290
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-16-5p
chr3
160404754
160404775
+
hsa-miR-339-5p
chr7
1022990
1023012
-
hsa-miR-497-5p
chr17
7017979
7017999
-
hsa-miR-588
chr6
126484646
126484666
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-541-3p
chr14
101064548
101064569
+
hsa-miR-744-5p
chr17
12081909
12081930
+
hsa-miR-1321
chrX
85835832
85835849
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007218.1
chr16
9666885
9676843
-
AC060780.1
chr17
43148368
43171037
-
AC099329.1
chr3
42785087
42852428
-
AC109460.3
chr16
28974804
28990775
+
AC124068.2
chr15
89335053
89336161
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA