Entry Detail


General Information

Database ID:exR0391420
RNA Name:ARPP19
RNA Type:mRNA
Chromosome:chr15
Starnd:-
Coordinate:
Start Site(bp):52547045End Site(bp):52569883
External Links:ENSG00000128989



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCD1
chrX
153724856
153744755
+
ABL2
chr1
179099330
179229684
-
AC010422.3
chr19
12643831
12648397
-
ACAT2
chr6
159762045
159779112
+
ACTG1
chr17
81509971
81523847
-
AHCYL2
chr7
129225023
129430211
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-24-3p
chr9
95086064
95086085
+
hsa-miR-105-5p
chrX
152394458
152394480
-
hsa-miR-34a-5p
chr1
9151735
9151756
-
hsa-miR-135a-5p
chr12
97563834
97563856
+
hsa-miR-34c-5p
chr11
111513451
111513473
+
hsa-miR-323a-3p
chr14
101025782
101025802
+
hsa-miR-135b-5p
chr1
205448361
205448383
-
hsa-miR-3654
chr7
133034860
133034878
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC078881.1
chr4
177442519
177681381
+
AC132217.1
chr11
2129121
2129964
-
AL137230.2
chr14
89628921
89642671
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA