Entry Detail


General Information

Database ID:exR0391645
RNA Name:ATXN7L3
RNA Type:mRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):44191805End Site(bp):44200113
External Links:ENSG00000087152



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACIN1
chr14
23058564
23095614
-
ACTR1A
chr10
102461881
102502712
-
ADAMTS17
chr15
99971437
100342005
-
ADNP
chr20
50888916
50931437
-
AKR1A1
chr1
45550543
45570049
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-15a-5p
chr13
50049167
50049188
-
hsa-miR-16-5p
chr3
160404754
160404775
+
hsa-miR-23a-3p
chr19
13836595
13836615
-
hsa-miR-103a-3p
chr5
168560904
168560926
-
hsa-miR-107
chr10
89592756
89592778
-
hsa-miR-214-3p
chr1
172138816
172138837
-
hsa-miR-23b-3p
chr9
95085265
95085287
+
hsa-miR-34c-5p
chr11
111513451
111513473
+
hsa-miR-331-3p
chr12
95308480
95308500
+
hsa-miR-324-3p
chr17
7223308
7223330
-
hsa-miR-449a
chr5
55170586
55170607
-
hsa-miR-490-3p
chr7
136903242
136903263
+
hsa-miR-491-5p
chr9
20716120
20716141
+
hsa-miR-449b-5p
chr5
55170706
55170727
-
hsa-miR-654-5p
chr14
101040234
101040255
+
hsa-miR-660-5p
chrX
50013256
50013277
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-541-3p
chr14
101064548
101064569
+
hsa-miR-1321
chrX
85835832
85835849
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC125257.1
chr17
41848518
41851447
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA