Entry Detail


General Information

Database ID:exR0391737
RNA Name:BASP1
RNA Type:mRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):17065598End Site(bp):17276843
External Links:ENSG00000176788



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
A4GALT
chr22
42692121
42721298
-
ABCB4
chr7
87401697
87480435
-
ABCC4
chr13
95019835
95301475
-
ABHD17B
chr9
71862452
71910931
-
AC006064.6
chr12
6556886
6607367
-
AC007192.1
chr19
18153158
18178117
+
AC245033.1
chr15
82536788
82573194
-
ACOXL
chr2
110732573
111118222
+
ACTG1
chr17
81509971
81523847
-
AGFG2
chr7
100539203
100568220
+
AKT1
chr14
104769349
104795751
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-324-5p
chr17
7223343
7223364
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007218.1
chr16
9666885
9676843
-
AC092490.1
chr12
8788253
8795789
+
AC245033.4
chr15
82533175
82540008
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA