exRNAdisease

General Information

Database ID:

exR0410058

RNA Name:

DSCAM-AS1

RNA Type:

lncRNA

Chromosome:

chr21

Starnd:

Coordinate:

Start Site(bp):

40383083

End Site(bp):

40385358

External Links:

Disease Information

Disease Name:	Clear Cell Renal Cell Carcinoma
Disease Category:	Cancers
MeSH ID:	D002292
Type:	Neoplasms/Urogenital Neoplasms
Alias:	Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

Expression Detail

GEO ID:	GSE125442
Description:	Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:	Cancer vs Control
Case Disease Type:	Clear Cell Renal Cell Carcinoma
Case Disease SubType:	NA
Case Sample:	Clear Cell Renal Cell Carcinoma
Control Sample:	Healthy
Number of Case:	10
Number of Control:	10
Number of Samples:	20

Regulatory Relationship

mRNA targets:

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-509-3p	chrX	147258775	147258796	-
hsa-miR-144-5p	chr17	28861583	28861604	-
hsa-miR-3163	chr11	66934476	66934497	-
hsa-miR-3174	chr15	90006764	90006786	+
hsa-miR-433-3p	chr14	100881949	100881970	+
hsa-miR-4784	chr2	131491208	131491227	-
hsa-miR-513b-5p	chrX	147199093	147199114	-
hsa-miR-494-3p	chr14	101029681	101029702	+
hsa-miR-580-3p	chr5	36147907	36147928	-
hsa-miR-3150a-3p	chr8	95072962	95072983	+
hsa-miR-186-5p	chr1	71067681	71067702	-
hsa-miR-3150b-3p	chr8	95072924	95072944	-
hsa-miR-3612	chr12	128294105	128294126	+
hsa-miR-204-5p	chr9	70810031	70810052	-
hsa-miR-122-5p	chr18	58451088	58451109	+
hsa-miR-380-3p	chr14	101025056	101025077	+
hsa-miR-374a-3p	chrX	74287295	74287316	-
hsa-miR-299-3p	chr14	101023832	101023853	+
hsa-miR-136-5p	chr14	100884716	100884738	+
hsa-miR-2355-3p	chr2	207109999	207110020	-
hsa-miR-6849-5p	chr8	144400318	144400340	-
hsa-miR-877-5p	chr6	30584332	30584351	+
hsa-miR-3611	chr10	35079609	35079629	-
hsa-miR-577	chr4	114656774	114656794	+
hsa-miR-5094	chr15	89850690	89850711	-
hsa-miR-6763-5p	chr12	132582002	132582020	+
hsa-miR-650	chr22	22822791	22822811	+
hsa-miR-6875-5p	chr7	100868041	100868061	+
hsa-miR-2681-3p	chr13	101967665	101967686	-
hsa-miR-147a	chr9	120244985	120245004	-

circRNA targets:

lncRNA targets:

Display:

Experiment Detail

GEO ID:	GSE125442
Sample Source:	Urine
Source Fraction:	Exosome
Platform:	GPL21290
Method:	NGS
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	882
Sample treatment protocol:	Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:	A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:	Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

Reference