exRNAdisease

General Information

Database ID:

exR0410158

RNA Name:

HCG11

RNA Type:

lncRNA

Chromosome:

chr6

Starnd:

Coordinate:

Start Site(bp):

26521709

End Site(bp):

26527404

External Links:

Disease Information

Disease Name:	Clear Cell Renal Cell Carcinoma
Disease Category:	Cancers
MeSH ID:	D002292
Type:	Neoplasms/Urogenital Neoplasms
Alias:	Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

Expression Detail

GEO ID:	GSE125442
Description:	Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:	Cancer vs Control
Case Disease Type:	Clear Cell Renal Cell Carcinoma
Case Disease SubType:	NA
Case Sample:	Clear Cell Renal Cell Carcinoma
Control Sample:	Healthy
Number of Case:	10
Number of Control:	10
Number of Samples:	20

Regulatory Relationship

mRNA targets:

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-654-3p	chr14	101040269	101040290	+
hsa-miR-1297	chr13	54311981	54311997	-
hsa-miR-576-5p	chr4	109488713	109488734	+
hsa-miR-129-2-3p	chr11	43581450	43581471	+
hsa-miR-656-3p	chr14	101066766	101066786	+
hsa-miR-579-3p	chr5	32394392	32394414	-
hsa-miR-522-3p	chr19	53751264	53751285	+
hsa-miR-539-3p	chr14	101047369	101047390	+
hsa-miR-144-3p	chr17	28861548	28861567	-
hsa-miR-485-3p	chr14	101055464	101055485	+
hsa-miR-26a-5p	chr3	37969413	37969434	+
hsa-miR-4424	chr1	178677763	178677784	+
hsa-miR-1277-5p	chrX	118386401	118386424	+
hsa-miR-129-1-3p	chr7	128207920	128207941	+
hsa-miR-376c-3p	chr14	101039732	101039752	+
hsa-miR-3145-3p	chr6	138435223	138435246	-
hsa-miR-520h	chr19	53742566	53742587	+
hsa-miR-382-3p	chr14	101054352	101054372	+
hsa-miR-3163	chr11	66934476	66934497	-
hsa-miR-483-3p	chr11	2134142	2134162	-
hsa-miR-499a-5p	chr20	34990408	34990428	+
hsa-miR-520g-3p	chr19	53722220	53722243	+
hsa-miR-4465	chr6	140683855	140683876	+
hsa-miR-28-3p	chr3	188688834	188688855	+
hsa-miR-7853-5p	chr6	6169380	6169400	-
hsa-miR-4637	chr5	14825932	14825953	-
hsa-miR-105-5p	chrX	152394458	152394480	-
hsa-miR-224-3p	chrX	151958584	151958606	-
hsa-miR-26b-5p	chr2	218402657	218402677	+
hsa-miR-545-5p	chrX	74287164	74287185	-

circRNA targets:

lncRNA targets:

Display:

Experiment Detail

GEO ID:	GSE125442
Sample Source:	Urine
Source Fraction:	Exosome
Platform:	GPL21290
Method:	NGS
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	882
Sample treatment protocol:	Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:	A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:	Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

Reference