Entry Detail


General Information

Database ID:exR0410225
RNA Name:LIMD1-AS1
RNA Type:lncRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):45676369End Site(bp):45689200
External Links:ENSG00000230530



Disease Information

Disease Name:Clear Cell Renal Cell Carcinoma
Disease Category:Cancers
MeSH ID:D002292
Type:Neoplasms/Urogenital Neoplasms
Alias:Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas



Expression Detail

GEO ID:GSE125442
Description:Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:Cancer vs Control
Case Disease Type:Clear Cell Renal Cell Carcinoma
Case Disease SubType:NA
Case Sample:Clear Cell Renal Cell Carcinoma
Control Sample:Healthy
Number of Case:10
Number of Control:10
Number of Samples:20





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004922.1
chr7
99325879
99394653
+
AC073508.2
chr17
40627356
40665141
-
AC073896.1
chr12
56285916
56316059
-
ACTN4
chr19
38647649
38731589
+
AL121758.1
chr20
646626
675800
-
AL713999.1
chr1
155169409
155187272
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-193a-3p
chr17
31560050
31560071
+
hsa-miR-193b-3p
chr16
14304017
14304038
+
hsa-miR-3605-3p
chr1
33332405
33332427
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL049796.1
chr1
93847174
93848939
+
AL132780.1
chr14
22929607
22956374
+
Display:



Experiment Detail

GEO ID:GSE125442
Sample Source:Urine
Source Fraction:Exosome
Platform:GPL21290
Method:NGS
Num of detected RNA Type:1
Num of detected RNAs of this Type:882
Sample treatment protocol:Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA