Entry Detail


General Information

Database ID:exR0410589
RNA Name:RMRP
RNA Type:lncRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):35657751End Site(bp):35658018
External Links:ENSG00000269900



Disease Information

Disease Name:Clear Cell Renal Cell Carcinoma
Disease Category:Cancers
MeSH ID:D002292
Type:Neoplasms/Urogenital Neoplasms
Alias:Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas



Expression Detail

GEO ID:GSE125442
Description:Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:Cancer vs Control
Case Disease Type:Clear Cell Renal Cell Carcinoma
Case Disease SubType:NA
Case Sample:Clear Cell Renal Cell Carcinoma
Control Sample:Healthy
Number of Case:10
Number of Control:10
Number of Samples:20





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCF3
chr3
184186023
184194012
+
ABR
chr17
1003518
1229738
-
AC005258.1
chr19
2269525
2341172
+
AC092143.1
chr16
89919165
89936092
+
AC124312.1
chr15
24955034
25000276
+
ACACA
chr17
37084992
37406836
-
ACTN4
chr19
38647649
38731589
+
ADAMTS1
chr21
26835755
26845409
-
AFMID
chr17
78187317
78207701
+
AHNAK
chr11
62433542
62556235
-
AKAP8L
chr19
15380050
15419141
-
AL035078.4
chr11
31812391
32104665
+
AC011005.1
chr7
129126518
129130793
+
AC011462.1
chr19
41350853
41425001
+
ACTL6A
chr3
179562886
179588407
+
AHSA1
chr14
77457870
77469472
+
AKT3
chr1
243488233
243851079
-
AL136295.4
chr14
24180395
24190416
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1-3p
chr18
21829015
21829036
-
hsa-miR-206
chr6
52144401
52144422
+
hsa-miR-580-3p
chr5
36147907
36147928
-
hsa-miR-613
chr12
12764709
12764728
+
hsa-miR-3142
chr5
160474450
160474471
+
hsa-miR-1245b-5p
chr2
188978133
188978153
-
hsa-miR-766-5p
chrX
119646799
119646820
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC008050.1
chr14
76495363
76726712
-
AC016405.3
chr8
122779971
122780830
-
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:GSE125442
Sample Source:Urine
Source Fraction:Exosome
Platform:GPL21290
Method:NGS
Num of detected RNA Type:1
Num of detected RNAs of this Type:882
Sample treatment protocol:Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA