exRNAdisease

General Information

Database ID:

exR0410637

RNA Name:

SNHG12

RNA Type:

lncRNA

Chromosome:

chr1

Starnd:

Coordinate:

Start Site(bp):

28578538

End Site(bp):

28583132

External Links:

Disease Information

Disease Name:	Clear Cell Renal Cell Carcinoma
Disease Category:	Cancers
MeSH ID:	D002292
Type:	Neoplasms/Urogenital Neoplasms
Alias:	Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

Expression Detail

GEO ID:	GSE125442
Description:	Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:	Cancer vs Control
Case Disease Type:	Clear Cell Renal Cell Carcinoma
Case Disease SubType:	NA
Case Sample:	Clear Cell Renal Cell Carcinoma
Control Sample:	Healthy
Number of Case:	10
Number of Control:	10
Number of Samples:	20

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC118553.2	chr1	99970011	100083321	+
AC138969.1	chr16	16317444	16350590	+
AKR1B1	chr7	134442356	134459284	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-15a-5p	chr13	50049167	50049188	-
hsa-miR-16-5p	chr3	160404754	160404775	+
hsa-miR-199a-5p	chr1	172144592	172144614	-
hsa-miR-199b-5p	chr9	128244783	128244805	-
hsa-miR-15b-5p	chr3	160404607	160404628	+
hsa-miR-195-5p	chr17	7017667	7017687	-
hsa-miR-320a-3p	chr8	22244975	22244996	-
hsa-miR-424-5p	chrX	134546680	134546701	-
hsa-miR-494-3p	chr14	101029681	101029702	+
hsa-miR-497-5p	chr17	7017979	7017999	-
hsa-miR-503-5p	chrX	134546371	134546393	-
hsa-miR-620	chr12	116148575	116148594	-
hsa-miR-129-1-3p	chr7	128207920	128207941	+
hsa-miR-129-2-3p	chr11	43581450	43581471	+
hsa-miR-320b	chr1	224257049	224257070	-
hsa-miR-320c	chr18	24321716	24321735	+
hsa-miR-1301-3p	chr2	25328651	25328674	-
hsa-miR-1270	chr19	20399320	20399342	-
hsa-miR-320d	chr13	40727828	40727846	-
hsa-miR-4429	chr2	11540652	11540671	-
hsa-miR-5047	chr17	64501230	64501250	-
hsa-miR-6512-3p	chr2	177313811	177313832	-
hsa-miR-6720-5p	chr6	1390359	1390381	-
hsa-miR-6838-5p	chr7	44073407	44073428	-

circRNA targets:

lncRNA targets:

Display:

Experiment Detail

GEO ID:	GSE125442
Sample Source:	Urine
Source Fraction:	Exosome
Platform:	GPL21290
Method:	NGS
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	882
Sample treatment protocol:	Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:	A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:	Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

Reference