exRNAdisease

General Information

Database ID:

exR0410638

RNA Name:

SNHG15

RNA Type:

lncRNA

Chromosome:

chr7

Starnd:

Coordinate:

Start Site(bp):

44983023

End Site(bp):

44986961

External Links:

Disease Information

Disease Name:	Clear Cell Renal Cell Carcinoma
Disease Category:	Cancers
MeSH ID:	D002292
Type:	Neoplasms/Urogenital Neoplasms
Alias:	Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

Expression Detail

GEO ID:	GSE125442
Description:	Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma
Experimental Design:	Cancer vs Control
Case Disease Type:	Clear Cell Renal Cell Carcinoma
Case Disease SubType:	NA
Case Sample:	Clear Cell Renal Cell Carcinoma
Control Sample:	Healthy
Number of Case:	10
Number of Control:	10
Number of Samples:	20

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC093525.2	chr16	2496032	2520218	+
ACTG1	chr17	81509971	81523847	-
ADAMTS7	chr15	78759206	78811464	-
ADH5	chr4	99070978	99088801	-

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-18a-5p	chr13	91350756	91350778	+
hsa-miR-141-3p	chr12	6964155	6964176	+
hsa-miR-153-3p	chr2	219294126	219294147	-
hsa-miR-188-5p	chrX	50003517	50003537	+
hsa-miR-200a-3p	chr1	1167916	1167937	+
hsa-miR-345-5p	chr14	100307876	100307897	+
hsa-miR-346	chr10	86264747	86264769	-
hsa-miR-18b-5p	chrX	134170084	134170106	-
hsa-miR-451a	chr17	28861403	28861424	-
hsa-miR-483-3p	chr11	2134142	2134162	-
hsa-miR-371a-5p	chr19	53787680	53787699	+
hsa-miR-873-5p	chr9	28888925	28888945	-
hsa-miR-1323	chr19	53671978	53671999	+
hsa-miR-548o-3p	chr20	38516607	38516628	+
hsa-miR-1252-5p	chr12	79419261	79419282	+
hsa-miR-4735-3p	chr1	196582417	196582437	-
hsa-miR-506-5p	chrX	147230788	147230809	-
hsa-miR-1180-5p	chr17	19344548	19344568	-
hsa-miR-6866-3p	chr17	40161980	40162001	+

circRNA targets:

lncRNA targets:

Display:

Experiment Detail

GEO ID:	GSE125442
Sample Source:	Urine
Source Fraction:	Exosome
Platform:	GPL21290
Method:	NGS
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	882
Sample treatment protocol:	Exosomes were isolated by ultracentrifugation from 50-ml urine samples.
RNA Extract protocol:	A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol.
RNA library preparation protocol:	Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

Reference