exRNAdisease

Entry Detail

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General Information

Database ID: exR0410639 RNA Name: SNHG16 RNA Type: lncRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 76557764 End Site(bp): 76565348 External Links: ENSG00000163597

Disease Information

Disease Name: Clear Cell Renal Cell Carcinoma Disease Category: Cancers MeSH ID: D002292 Type: Neoplasms/Urogenital Neoplasms Alias: Carcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Kidneys, Adenocarcinoma Of//Renal Cell Cancer//Cancer, Renal Cell//Cancers, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Adenocarcinomas, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Carcinomas, Nephroid//Nephroid Carcinomas//Renal Cell Carcinoma//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Carcinomas, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

Expression Detail

GEO ID: GSE125442 Description: Urinary exosomal long noncoding RNAs may be novel biomarkers for the diagnosis of clear cell renal cell carcinoma Experimental Design: Cancer vs Control Case Disease Type: Clear Cell Renal Cell Carcinoma Case Disease SubType: NA Case Sample: Clear Cell Renal Cell Carcinoma Control Sample: Healthy Number of Case: 10 Number of Control: 10 Number of Samples: 20

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC015802.6 chr17 76563710 76570544 - AC015813.2 chr17 57989038 58007246 - AC245033.1 chr15 82536788 82573194 - ACTG1 chr17 81509971 81523847 - AGPAT1 chr6 32168212 32178096 - AL022238.4 chr22 40346529 40410054 + AC138969.1 chr16 16317444 16350590 + ACP5 chr19 11574660 11579008 - ADAMTS15 chr11 130448974 130476641 + AIMP1 chr4 106315544 106349456 + ALDH3A2 chr17 19648136 19685760 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-421 chrX 74218392 74218414 - hsa-miR-302d-3p chr4 112648006 112648028 - hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-4458 chr5 8460933 8460951 + hsa-miR-500b-5p chrX 50010682 50010699 + hsa-miR-4500 chr13 87618671 87618687 - hsa-miR-372-3p chr19 53787931 53787953 + hsa-miR-508-3p chrX 147236945 147236967 - hsa-miR-510-5p chrX 147272378 147272399 - hsa-miR-3619-5p chr22 46091059 46091080 + hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-2681-3p chr13 101967665 101967686 - hsa-miR-664b-3p chrX 154768635 154768656 + hsa-miR-761 chr1 51836375 51836396 - hsa-miR-30b-5p chr8 134800570 134800591 - hsa-miR-5047 chr17 64501230 64501250 - hsa-miR-6823-3p chr3 48549961 48549981 - hsa-miR-196b-5p chr7 27169528 27169549 - hsa-let-7i-5p chr12 62603691 62603712 + hsa-miR-193a-5p chr17 31560016 31560037 + hsa-miR-30d-5p chr8 134804919 134804940 - hsa-miR-20a-5p chr13 91351072 91351094 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-212-3p chr17 2050290 2050310 - hsa-let-7c-5p chr21 16539838 16539859 + hsa-miR-1301-3p chr2 25328651 25328674 - hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-485-5p chr14 101055427 101055448 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC007996.1 chr18 26542971 26545791 - AC093827.4 chr4 86924630 86936202 - AC138904.1 chr16 28284885 28292064 - AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE125442 Sample Source: Urine Source Fraction: Exosome Platform: GPL21290 Method: NGS Num of detected RNA Type: 1 Num of detected RNAs of this Type: 882 Sample treatment protocol: Exosomes were isolated by ultracentrifugation from 50-ml urine samples. RNA Extract protocol: A MiRNeasy Serum/Plasma Kit (QIAGEN, Valencia, CA, USA) was used to extract RNA from urinary exosome samples in accordance with the manufacturer's protocol. RNA library preparation protocol: Fragmented RNA (the average length was approximately 200 bp) were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA