Entry Detail


General Information

Database ID:exR0444561
RNA Name:AAAS
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):53307456End Site(bp):53324864
External Links:ENSG00000094914



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MSI1
chr12
120341330
120369164
-
RPL11
chr1
23691742
23696835
+
RPLP2
chr11
809965
812880
+
MIF
chr22
23894383
23895227
+
MRPS10
chr6
42206807
42217861
-
RCSD1
chr1
167630093
167708696
+
LRCH4
chr7
100574011
100586129
-
LRP2
chr2
169127109
169362534
-
MEX3C
chr18
51174550
51218304
-
MTRNR2L12
chr3
96617188
96618236
-
MTA1
chr14
105419820
105470729
+
B2M
chr15
44711487
44718877
+
CDC25B
chr20
3786772
3806121
+
SFPQ
chr1
35176378
35193145
-
ZNF207
chr17
32350117
32381886
+
VPS41
chr7
38722974
38932394
-
RPL13
chr16
89560657
89566828
+
METTL16
chr17
2405562
2511891
-
MAPK14
chr6
36027677
36111236
+
CD99
chrX
2691187
2741309
+
YBX3
chr12
10699089
10723323
-
AP000350.4
chr22
23862188
23895223
+
PKM
chr15
72199029
72231822
-
FRAS1
chr4
78057323
78544269
+
LRIG1
chr3
66378797
66501263
-
RACK1
chr5
181236897
181248096
-
ALDOA
chr16
30064164
30070457
+
MYL6
chr12
56158161
56163496
+
NBR1
chr17
43170481
43211689
+
LAMA5
chr20
62307955
62367312
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC069281.2
chr7
100572232
100578700
-
PCAT6
chr1
202810954
202812156
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.