Entry Detail



General Information

Database ID:exR0444608
RNA Name:ABCC5
RNA Type:mRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):183919934End Site(bp):184017939
External Links:ENSG00000114770



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
VAPA
chr18
9914002
9960021
+
DGKQ
chr4
958887
986895
-
STRADA
chr17
63682336
63741986
-
POFUT1
chr20
32207880
32238658
+
DSTN
chr20
17570075
17609919
+
EEF1D
chr8
143579697
143599541
-
STRA6
chr15
74179466
74212267
-
WDR43
chr2
28894667
28948219
+
TMEM63A
chr1
225845536
225882380
-
OBSL1
chr2
219550728
219571859
-
RITA1
chr12
113185526
113192368
+
MKRN1
chr7
140453033
140479536
-
BSG
chr19
571277
583493
+
CALM3
chr19
46601074
46610782
+
RPL37
chr5
40825262
40835222
-
PLEKHG3
chr14
64704102
64750249
+
SMAD4
chr18
51028394
51085045
+
SNX5
chr20
17941597
17968980
-
PPP2R3B
chrX
333933
386955
-
SCMH1
chr1
41027200
41242154
-
LCK
chr1
32251239
32286165
+
SIK2
chr11
111602449
111730855
+
PPP2R1B
chr11
111726908
111766389
-
SNX2
chr5
122775079
122834543
+
KLHL23
chr2
169694488
169776989
+
RAB4B-EGLN2
chr19
40778242
40808418
+
WDR86
chr7
151375909
151410727
-
REPS1
chr6
138903493
138988261
-
PABPC3
chr13
25095868
25099254
+
PROCA1
chr17
28703197
28711854
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-1323
chr19
53671978
53671999
+
hsa-miR-548o-3p
chr20
38516607
38516628
+
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.