Entry Detail


General Information

Database ID:exR0444664
RNA Name:AC002996.1
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):111753890End Site(bp):111791418
External Links:ENSG00000257767



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACAD10
chr12
111686056
111757107
+
ALDH2
chr12
111766887
111817532
+
CDH3
chr16
68636189
68722616
+
FGFR1
chr8
38400215
38468834
-
GPT2
chr16
46884362
46931289
+
IL32
chr16
3065297
3082192
+
IPP
chr1
45694324
45750653
-
MT-ND2
chrMT
4470
5511
+
NAP1L1
chr12
76036585
76084958
-
PELI3
chr11
66466327
66477337
+
PEX5
chr12
7188685
7218574
+
PITPNM1
chr11
67491768
67506263
-
RBM39
chr20
35701347
35742312
-
RCC2
chr1
17406760
17439677
-
RPS14
chr5
150442635
150449739
-
SIKE1
chr1
114769479
114780685
-
UBL7
chr15
74445977
74461182
-
ZNF891
chr12
133106817
133130473
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.