Entry Detail


General Information

Database ID:exR0444675
RNA Name:AC005832.4
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):4604944End Site(bp):4662643
External Links:ENSG00000272921



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MCM5
chr22
35400134
35425431
+
HNRNPH3
chr10
68331174
68343191
+
EDARADD
chr1
236348257
236502915
+
TXNDC12
chr1
52020131
52055191
-
AC138811.2
chr16
18788063
18801519
-
SAMD1
chr19
14087851
14091036
-
TUFM
chr16
28842411
28846348
-
RSPRY1
chr16
57186137
57240469
+
RPS15A
chr16
18781295
18790383
-
AL121845.3
chr20
63708864
63739103
+
MYL12B
chr18
3261479
3278431
+
RABGGTA
chr14
24265538
24271739
-
MT-ND3
chrMT
10059
10404
+
RPLP0
chr12
120196699
120201235
-
AL121845.2
chr20
63738270
63740398
+
NUCKS1
chr1
205712822
205750182
-
COX8A
chr11
63974620
63976543
+
TXNL1
chr18
56597209
56651600
-
ENO1
chr1
8861000
8879190
-
PFN2
chr3
149964904
150050788
-
KANSL1
chr17
46029916
46225389
-
NDUFA9
chr12
4649095
4694317
+
AP000721.1
chr11
63974620
63988346
+
FUS
chr16
31180110
31194871
+
EIF4A2
chr3
186783205
186789897
+
TUBA1A
chr12
49184795
49189080
-
BCR
chr22
23179704
23318037
+
OSBPL8
chr12
76351797
76559809
-
C17orf49
chr17
7014495
7017525
+
RBM5
chr3
50088919
50119021
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005833.2
chr12
4804499
4830747
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.