exRNAdisease

Entry Detail

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General Information

Database ID: exR0444677 RNA Name: AC007040.2 RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 70939318 End Site(bp): 70995336 External Links: ENSG00000258881

Disease Information

Disease Name: Disease Category: MeSH ID: Type: Alias:

Expression Detail

GEO ID: GSE122377 Description: Tuberculous Meningitis in Pediatric Patients [CSF] Experimental Design: Disease Sample Source Case Disease Type: Pediatric TB meningitis Case Disease SubType: NA Case Sample: Ventricular Cerebrospinal Fluid Control Sample: Lumbar Puncture Cerebrospinal Fluid Number of Case: 12 Number of Control: 12 Number of Samples: 24

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RPS18 chr6 33272075 33276511 + FAM189B chr1 155247205 155255483 - FAT1 chr4 186587794 186726722 - SZRD1 chr1 16352575 16398145 + NRXN1 chr2 49918503 51225575 - AC010422.3 chr19 12643831 12648397 - EIF1 chr17 41688885 41692668 + ACTB chr7 5527148 5563784 - CMTM3 chr16 66603874 66613892 + RETREG3 chr17 42579513 42610623 - NAP1L1 chr12 76036585 76084958 - ENTPD6 chr20 25195693 25228075 + SORBS1 chr10 95311771 95561414 - MIOS chr7 7566875 7608932 + KRT7 chr12 52232520 52252186 + TPT1 chr13 45333471 45341370 - CSNK2A1 chr20 472498 543835 - ISG20L2 chr1 156721891 156728799 - HADH chr4 107989714 108035175 + AP1S2 chrX 15825806 15854931 - STYXL1 chr7 75996338 76048004 - TEX261 chr2 70985942 70994873 - TMEM184B chr22 38219291 38273010 - PDIA3 chr15 43746410 43773278 + EEF2 chr19 3976056 3985463 - GPI chr19 34359480 34402413 + MTRNR2L12 chr3 96617188 96618236 - INPPL1 chr11 72223701 72239147 + LPIN3 chr20 41340920 41360582 + CTDNEP1 chr17 7243591 7252491 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 31434901 Title: Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity Author: Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ Journal: Nat Commun. 2019 Aug 21;10(1):3767. Description: Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.