Entry Detail


General Information

Database ID:exR0444679
RNA Name:AC008758.1
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):12461559End Site(bp):12551474
External Links:ENSG00000196826



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008758.6
chr19
12433103
12484816
-
CALM1
chr14
90396502
90408268
+
FAM72D
chr1
145095974
145112696
+
HLA-B
chr6
31269491
31357188
-
HSPA8
chr11
123057489
123063230
-
NCOR2
chr12
124324415
124567589
-
PAFAH1B1
chr17
2593210
2685615
+
RPS8
chr1
44775251
44778779
+
SDF4
chr1
1216908
1232067
-
ZNF14
chr19
19710472
19733112
-
ZNF443
chr19
12429706
12441021
-
ZNF563
chr19
12317477
12333720
-
ZNF564
chr19
12525373
12551542
-
ZNF627
chr19
11559374
11619161
+
ZNF791
chr19
12610918
12633840
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-23a-3p
chr19
13836595
13836615
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008543.1
chr19
11639754
11686569
+
RPARP-AS1
chr10
102449816
102461106
+
ZNF433-AS1
chr19
11987617
12046275
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.