Entry Detail


General Information

Database ID:exR0444684
RNA Name:AC010132.3
RNA Type:mRNA
Chromosome:chr7
Starnd:-
Coordinate:
Start Site(bp):42909273End Site(bp):42932174
External Links:ENSG00000256646



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
FAM83D
chr20
38926312
38953106
+
LRRC8A
chr9
128882112
128918039
+
MDFIC
chr7
114922154
115019202
+
LRRD1
chr7
92141643
92179531
-
IGBP1
chrX
70133447
70166324
+
FNBP1
chr9
129887187
130043194
-
CKB
chr14
103519667
103522833
-
DDX39B
chr6
31530219
31542448
-
IPO5
chr13
97953658
98024296
+
FAU
chr11
65120630
65122177
-
SLC25A20
chr3
48856926
48898904
-
TOMM7
chr7
22812628
22822852
-
RACK1
chr5
181236897
181248096
-
ANP32E
chr1
150218417
150236156
-
MRPL30
chr2
99181152
99199561
+
PRIMA1
chr14
93718298
93788485
-
UBR5
chr8
102252273
102412759
-
VDAC1
chr5
133971871
134004975
-
FOXRED2
chr22
36487190
36507101
-
ACTR2
chr2
65227753
65271253
+
ZNF292
chr6
87152833
87265943
+
AC009779.4
chr12
55716036
55724703
+
VCL
chr10
73995193
74121363
+
RAB1A
chr2
65070696
65130331
-
SCD
chr10
100347233
100364826
+
GTF3C2
chr2
27325849
27357034
-
PLP2
chrX
49171898
49175235
+
GPI
chr19
34359480
34402413
+
MAF1
chr8
144104461
144107611
+
PCMT1
chr6
149749443
149811420
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC104257.1
chr8
131308545
131317632
+
ARHGAP27P1-BPTFP1-KPNA2P3
chr17
64749663
64781707
-
LOXL1-AS1
chr15
73908071
73928248
-
WAC-AS1
chr10
28522652
28533066
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.