Entry Detail


General Information

Database ID:exR0444690
RNA Name:AC011462.1
RNA Type:mRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):41350853End Site(bp):41425001
External Links:ENSG00000255730



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010422.3
chr19
12643831
12648397
-
ADD3
chr10
109996368
110135565
+
RPS18
chr6
33272075
33276511
+
HMG20B
chr19
3572777
3579088
+
PARP1
chr1
226360691
226408093
-
EIF4B
chr12
53006158
53042209
+
RPS17
chr15
82536750
82540459
-
NUP62
chr19
49906825
49929763
-
PPIA
chr7
44796680
44824564
+
AC011448.1
chr19
19516227
19536076
+
EIF3D
chr22
36510855
36529184
-
ATP5ME
chr4
672436
674330
-
MCL1
chr1
150574551
150579738
-
PRRC2A
chr6
31620715
31637771
+
LSM4
chr19
18306230
18323274
-
TAGLN2
chr1
159918107
159925732
-
RING1
chr6
33208500
33212722
+
SND1
chr7
127652194
128092609
+
CYB561A3
chr11
61348745
61362299
-
RNASEH2C
chr11
65714005
65720818
-
TRAF4
chr17
28744005
28750956
+
HLA-B
chr6
31269491
31357188
-
SALL2
chr14
21521080
21537216
-
IPO13
chr1
43946950
43968022
+
RPS15
chr19
1438358
1440494
+
Z83844.3
chr22
37639693
37666932
+
PTP4A3
chr8
141391995
141432454
+
DESI1
chr22
41598028
41621043
-
ICAM1
chr19
10271093
10286615
+
B2M
chr15
44711487
44718877
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
RMRP
chr9
35657751
35658018
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.