Entry Detail


General Information

Database ID:exR0444693
RNA Name:AC012184.2
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):70299194End Site(bp):70372582
External Links:ENSG00000260537



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SELENON
chr1
25800176
25818221
+
PRDX1
chr1
45511036
45523047
-
UBA5
chr3
132654446
132678097
+
LPCAT1
chr5
1456480
1523962
-
PCM1
chr8
17922840
18029944
+
CYTH2
chr19
48469208
48482314
+
ALDOA
chr16
30064164
30070457
+
GAPDH
chr12
6534512
6538374
+
TMA7
chr3
48440257
48444208
+
GSPT1
chr16
11868128
11916082
-
SNW1
chr14
77717599
77761207
-
GSTP1
chr11
67583742
67586656
+
GPR176
chr15
39799008
39920266
-
TMEM30A
chr6
75252924
75284948
-
PSMD3
chr17
39980807
39997959
+
CDCA7
chr2
173354820
173368997
+
B2M
chr15
44711487
44718877
+
DAGLA
chr11
61680391
61747001
+
TM9SF2
chr13
99446311
99564048
+
EFNB2
chr13
106489745
106535662
-
CYHR1
chr8
144449582
144465677
-
PABPC1
chr8
100685816
100722809
-
AP002990.1
chr11
62559603
62591531
-
PRDX2
chr19
12796820
12801800
-
SMPD4
chr2
130151392
130182750
-
GOSR2
chr17
46923075
46975524
+
C19orf71
chr19
3539154
3544030
+
PFKL
chr21
44300051
44327376
+
DERL1
chr8
123013170
123042302
-
FXYD6
chr11
117836976
117877486
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.