Entry Detail


General Information

Database ID:exR0444721
RNA Name:AC090360.1
RNA Type:mRNA
Chromosome:chr18
Starnd:+
Coordinate:
Start Site(bp):80034346End Site(bp):80097088
External Links:ENSG00000267127



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD12
chr20
25294742
25390835
-
AC040162.1
chr16
67929614
67936017
-
CALM3
chr19
46601074
46610782
+
CCL22
chr16
57358783
57366189
+
EIF3CL
chr16
28379579
28403879
-
GDPD5
chr11
75434640
75525941
-
ITGA6
chr2
172427354
172506459
+
KHSRP
chr19
6413348
6424794
-
MIF
chr22
23894383
23895227
+
NDUFV1
chr11
67605653
67612554
+
PSMB10
chr16
67934506
67936864
-
RBFA
chr18
80034389
80050651
+
RPL10A
chr6
35468401
35470785
+
SAT1
chrX
23783173
23786226
+
SH3BGRL
chrX
81202102
81298547
+
SLC35A4
chr5
140564828
140569100
+
TAGLN2
chr1
159918107
159925732
-
TRRAP
chr7
98877933
99050831
+
UBE3C
chr7
157138916
157269370
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.