Entry Detail


General Information

Database ID:exR0444724
RNA Name:AC091959.3
RNA Type:mRNA
Chromosome:chr5
Starnd:+
Coordinate:
Start Site(bp):146203550End Site(bp):146339251
External Links:ENSG00000275740



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CLDN15
chr7
101232092
101238820
-
ERP29
chr12
112013348
112023449
+
RPL13
chr16
89560657
89566828
+
CXCR5
chr11
118883892
118897787
+
UBAP2L
chr1
154220179
154271510
+
ARHGAP19
chr10
97222173
97292673
-
PIGS
chr17
28553383
28571794
-
NUCKS1
chr1
205712822
205750182
-
NIPSNAP1
chr22
29554808
29581327
-
GDE1
chr16
19501693
19522123
-
PICALM
chr11
85957175
86069882
-
AC008763.3
chr19
7678501
7682854
+
TUBB
chr6
30720352
30725426
+
IGSF8
chr1
160091340
160098943
-
HSPA8
chr11
123057489
123063230
-
RBM27
chr5
146203605
146289223
+
CERS1
chr19
18868545
18896727
-
UBL4A
chrX
154483717
154486615
-
SERGEF
chr11
17788048
18013047
-
THOC5
chr22
29505879
29555216
-
ANP32E
chr1
150218417
150236156
-
RIPOR1
chr16
67518418
67546788
+
LMBRD1
chr6
69672757
69867236
-
TPT1
chr13
45333471
45341370
-
HRAS
chr11
532242
537287
-
TICRR
chr15
89575469
89631056
+
IDH3B
chr20
2658395
2664219
-
TRAPPC5
chr19
7680833
7687703
+
PGAM1
chr10
97426191
97433444
+
MARCKSL1
chr1
32333839
32336233
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC055860.1
chr11
18000542
18022931
-
HOTAIRM1
chr7
27095647
27100265
+
NNT-AS1
chr5
43571594
43603230
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.