Entry Detail


General Information

Database ID:exR0444726
RNA Name:AC092718.3
RNA Type:mRNA
Chromosome:chr16
Starnd:-
Coordinate:
Start Site(bp):81053587End Site(bp):81096296
External Links:ENSG00000260643



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC092718.8
chr16
81022316
81096284
-
BTBD2
chr19
1985438
2034881
-
C16orf46
chr16
81053497
81077267
-
CREBBP
chr16
3725054
3880713
-
CSNK1G2
chr19
1941172
1981338
+
DAP3
chr1
155687960
155739010
+
FLOT1
chr6
30727709
30742732
-
GCSH
chr16
81081945
81096395
-
HNRNPL
chr19
38836388
38852347
-
IL17RD
chr3
57089982
57170306
-
JKAMP
chr14
59484443
59505410
+
LZTS2
chr10
100996618
101007836
+
MEGF8
chr19
42325609
42378769
+
MKRN2
chr3
12557087
12583713
+
MT-ND1
chrMT
3307
4262
+
PKMYT1
chr16
2968024
2980479
-
RAB3B
chr1
51907956
51990700
-
RPL37A
chr2
216498825
216579180
+
RPLP0
chr12
120196699
120201235
-
SRM
chr1
11054584
11060020
-
TPT1
chr13
45333471
45341370
-
UBE2D1
chr10
58334979
58370751
+
XPR1
chr1
180632022
180890279
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
OLMALINC
chr10
100373099
100454043
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.