Entry Detail


General Information

Database ID:exR0444731
RNA Name:AC097637.1
RNA Type:mRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):52221081End Site(bp):52231190
External Links:ENSG00000173366



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACIN1
chr14
23058564
23095614
-
AGRN
chr1
1020120
1056118
+
C11orf95
chr11
63759892
63768775
-
COX4I1
chr16
85798633
85807068
+
CSRP1
chr1
201483530
201509456
-
DDX41
chr5
177511577
177516961
-
GPBP1L1
chr1
45627304
45688113
-
HDLBP
chr2
241227264
241317061
-
HLA-E
chr6
30489509
30494194
+
HNRNPA0
chr5
137745651
137754363
-
HNRNPH1
chr5
179614178
179634784
-
MTMR3
chr22
29883155
30030866
+
PFDN5
chr12
53295291
53299450
+
PIM1
chr6
37170152
37175428
+
POFUT1
chr20
32207880
32238658
+
RCC2
chr1
17406760
17439677
-
RHOV
chr15
40872214
40874234
-
RNF207
chr1
6205475
6221299
+
SERPINB9
chr6
2887270
2903309
-
SH3D21
chr1
36306368
36329340
+
SNRPB
chr20
2461634
2470853
-
TMEM259
chr19
1009648
1021179
-
TWF2
chr3
52228612
52239158
-
XRCC5
chr2
216107464
216206303
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC253536.6
chr22
23969211
23969873
+
AL645608.6
chr1
904834
915976
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.