Entry Detail


General Information

Database ID:exR0446872
RNA Name:CCT6A
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):56051685End Site(bp):56063989
External Links:ENSG00000146731



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABR
chr17
1003518
1229738
-
AC009133.6
chr16
29812261
29820092
+
AC015813.2
chr17
57989038
58007246
-
AC048338.1
chr12
122207779
122266423
-
AC058822.1
chr4
53377839
54295272
+
AC068547.1
chr2
151802651
151973949
-
AC090004.1
chr3
14135217
14148252
+
ACTL6A
chr3
179562886
179588407
+
ACTR2
chr2
65227753
65271253
+
ADD2
chr2
70607618
70768225
-
ADGRG6
chr6
142301854
142446266
+
AL365205.1
chr6
41780349
41790141
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-374b-5p
chrX
74218587
74218608
-
hsa-miR-3652
chr12
103930425
103930442
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007218.1
chr16
9666885
9676843
-
AC016065.1
chr8
6403551
6407142
-
AC016876.2
chr17
7581964
7584086
-
AC132217.1
chr11
2129121
2129964
-
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.