exRNAdisease

Entry Detail

---



General Information

Database ID: exR0447613 RNA Name: COL4A2 RNA Type: mRNA Chromosome: chr13 Starnd: + Coordinate: Start Site(bp): 110305812 End Site(bp): 110513209 External Links: ENSG00000134871

Disease Information

Disease Name: Disease Category: MeSH ID: Type: Alias:

Expression Detail

GEO ID: GSE122377 Description: Tuberculous Meningitis in Pediatric Patients [CSF] Experimental Design: Disease Sample Source Case Disease Type: Pediatric TB meningitis Case Disease SubType: NA Case Sample: Ventricular Cerebrospinal Fluid Control Sample: Lumbar Puncture Cerebrospinal Fluid Number of Case: 12 Number of Control: 12 Number of Samples: 24

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD10 chr3 111979010 111993368 + ACIN1 chr14 23058564 23095614 - ADNP2 chr18 80109262 80147523 + AF241726.2 chrX 37349330 38687674 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-199b-5p chr9 128244783 128244805 - hsa-miR-140-5p chr16 69933103 69933124 + hsa-miR-302a-3p chr4 112648186 112648208 - hsa-miR-34c-5p chr11 111513451 111513473 + hsa-miR-299-3p chr14 101023832 101023853 + hsa-miR-302d-3p chr4 112648006 112648028 - hsa-miR-491-5p chr9 20716120 20716141 + hsa-miR-519c-5p chr19 53686484 53686505 + hsa-miR-520a-3p chr19 53690933 53690954 + hsa-miR-526a-5p chr19 53726928 53726949 + hsa-miR-519b-5p chr19 53695225 53695246 + hsa-miR-520c-5p chr19 53707468 53707489 + hsa-miR-518d-5p chr19 53734892 53734913 + hsa-miR-302e chr11 7234771 7234787 + hsa-miR-6850-5p chr8 144791970 144791991 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009088.1 chr16 31196131 31196963 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 31434901 Title: Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity Author: Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ Journal: Nat Commun. 2019 Aug 21;10(1):3767. Description: Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.