Entry Detail


General Information

Database ID:exR0447821
RNA Name:CS
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):56271699End Site(bp):56300391
External Links:ENSG00000062485



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAMP
chr2
218264123
218270257
-
ABCB9
chr12
122920951
122981649
-
ABHD10
chr3
111979010
111993368
+
AC004922.1
chr7
99325879
99394653
+
AC073896.1
chr12
56285916
56316059
-
AC138811.2
chr16
18788063
18801519
-
ACTR2
chr2
65227753
65271253
+
AHCYL1
chr1
109984765
110023742
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-196a-5p
chr17
48632532
48632553
-
hsa-miR-196b-5p
chr7
27169528
27169549
-
hsa-miR-431-5p
chr14
100881026
100881046
+
hsa-miR-654-5p
chr14
101040234
101040255
+
hsa-miR-198
chr3
120395703
120395724
-
hsa-miR-5001-5p
chr2
232550530
232550553
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007218.1
chr16
9666885
9676843
-
AC008267.5
chr7
66493607
66495758
+
AC040977.2
chr17
6985494
7019414
-
AC115284.1
chr3
51961212
51974031
-
AL031595.3
chr22
44139365
44153626
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.