Entry Detail


General Information

Database ID:exR0448172
RNA Name:DDIT4
RNA Type:mRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):72273924End Site(bp):72276036
External Links:ENSG00000168209



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABI2
chr2
203328239
203447728
+
AC005258.1
chr19
2269525
2341172
+
AC006064.6
chr12
6556886
6607367
-
AC008982.1
chr19
38817471
38840178
-
AC010422.3
chr19
12643831
12648397
-
AC011462.1
chr19
41350853
41425001
+
AC011511.4
chr19
10315471
10320678
-
AC068547.1
chr2
151802651
151973949
-
AC092143.1
chr16
89919165
89936092
+
AC139530.2
chr17
81703371
81720539
+
ACLY
chr17
41866917
41930542
-
ACTA2
chr10
88935074
88991339
-
ACTB
chr7
5527148
5563784
-
ACTG1
chr17
81509971
81523847
-
ACTR1B
chr2
97655939
97664044
-
ADAMTS12
chr5
33523535
33892019
-
ADAR
chr1
154582057
154628013
-
ADH5
chr4
99070978
99088801
-
ADM
chr11
10305073
10307397
+
ADRM1
chr20
62302093
62308862
+
AGFG1
chr2
227472152
227561214
+
AHCYL1
chr1
109984765
110023742
+
AIFM1
chrX
130129362
130165887
-
AK2
chr1
33007940
33080996
-
AKNA
chr9
114334156
114394405
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-221-3p
chrX
45746180
45746202
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC004771.3
chr17
4967995
4968822
+
AC016876.2
chr17
7581964
7584086
-
AC020663.1
chr16
4730115
4752565
-
AC025165.5
chr12
57803838
57804415
+
AC135048.1
chr16
30948386
30956511
+
AC234582.1
chr1
155195004
155205495
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.