Entry Detail


General Information

Database ID:exR0448198
RNA Name:DDX39B
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):31530219End Site(bp):31542448
External Links:ENSG00000198563



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AASS
chr7
122073549
122144255
-
ABCC1
chr16
15949577
16143074
+
AC004922.1
chr7
99325879
99394653
+
AC010132.3
chr7
42909273
42932174
-
AC010323.1
chr19
8308283
8321379
-
AC011530.1
chr19
45779437
45785973
-
AC020915.5
chr19
58228914
58315183
+
AC124312.1
chr15
24955034
25000276
+
ACADM
chr1
75724347
75787575
+
ACAP3
chr1
1292390
1309609
-
ACAT2
chr6
159762045
159779112
+
ACSL3
chr2
222860942
222944639
+
ADCY9
chr16
3953387
4116442
-
ADGRG6
chr6
142301854
142446266
+
AFF1
chr4
86935002
87141054
+
AHCYL1
chr1
109984765
110023742
+
AHNAK
chr11
62433542
62556235
-
AL365205.1
chr6
41780349
41790141
+
ALDH16A1
chr19
49453225
49471050
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC016876.2
chr17
7581964
7584086
-
AC067852.2
chr17
42552436
42554748
-
AC109460.3
chr16
28974804
28990775
+
AC115284.1
chr3
51961212
51974031
-
AC120114.1
chr16
29926836
29928933
+
AC144548.1
chr12
110387463
110445548
-
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.