Entry Detail


General Information

Database ID:exR0448207
RNA Name:DDX5
RNA Type:mRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):64498254End Site(bp):64508199
External Links:ENSG00000108654



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCB4
chr7
87401697
87480435
-
ABCB7
chrX
75051048
75156732
-
ABCF2
chr7
151207837
151227166
-
AC005258.1
chr19
2269525
2341172
+
AC010132.3
chr7
42909273
42932174
-
AC010422.3
chr19
12643831
12648397
-
AC024592.3
chr19
5866171
5903787
-
AC048338.1
chr12
122207779
122266423
-
AC093525.2
chr16
2496032
2520218
+
AC120057.2
chr17
7240427
7244635
-
AC245033.1
chr15
82536788
82573194
-
ACOT13
chr6
24667035
24705065
+
ACSS2
chr20
34872146
34927962
+
ADA2
chr22
17178790
17258235
-
ADIPOR2
chr12
1688574
1788674
+
AFDN
chr6
167826922
167972023
+
AGFG2
chr7
100539203
100568220
+
AGO1
chr1
35869808
35930532
+
AGO4
chr1
35808016
35857890
+
AGPAT5
chr8
6708642
6761503
+
AHDC1
chr1
27534035
27604431
-
AKAP12
chr6
151239967
151358559
+
AKIRIN1
chr1
38991276
39006059
+
AL133352.1
chr10
100505628
100529881
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-18a-5p
chr13
91350756
91350778
+
hsa-miR-33a-5p
chr22
41900949
41900969
+
hsa-miR-141-3p
chr12
6964155
6964176
+
hsa-miR-206
chr6
52144401
52144422
+
hsa-miR-302b-3p
chr4
112648489
112648511
-
hsa-miR-33b-5p
chr17
17813897
17813916
-
hsa-miR-3064-5p
chr17
64500817
64500837
-
hsa-miR-3064-3p
chr17
64500775
64500797
-
hsa-miR-5047
chr17
64501230
64501250
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC020663.1
chr16
4730115
4752565
-
AC023509.1
chr12
53441741
53467528
+
AC079781.5
chr7
97851688
97972985
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.