Entry Detail


General Information

Database ID:exR0450611
RNA Name:HDGF
RNA Type:mRNA
Chromosome:chr1
Starnd:-
Coordinate:
Start Site(bp):156742109End Site(bp):156766925
External Links:ENSG00000143321



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AAGAB
chr15
67200667
67255195
-
ABL1
chr9
130713016
130887675
+
AC006030.1
chr2
74211604
74363377
-
AC006064.6
chr12
6556886
6607367
-
AC008982.1
chr19
38817471
38840178
-
AC010422.3
chr19
12643831
12648397
-
AC093525.2
chr16
2496032
2520218
+
AC124312.1
chr15
24955034
25000276
+
AC139530.2
chr17
81703371
81720539
+
ACTB
chr7
5527148
5563784
-
ADAR
chr1
154582057
154628013
-
ADD2
chr2
70607618
70768225
-
ADD3
chr10
109996368
110135565
+
ADNP
chr20
50888916
50931437
-
AHCYL1
chr1
109984765
110023742
+
AIF1L
chr9
131096476
131123152
+
AKIRIN2
chr6
87674860
87702233
-
AKR1A1
chr1
45550543
45570049
+
AL136454.1
chr1
192716132
192716653
+
AL139011.2
chr1
160216800
160285130
-
AL590132.1
chr1
210858125
211134146
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-103a-3p
chr5
168560904
168560926
-
hsa-miR-107
chr10
89592756
89592778
-
hsa-miR-214-3p
chr1
172138816
172138837
-
hsa-miR-15b-5p
chr3
160404607
160404628
+
hsa-miR-491-5p
chr9
20716120
20716141
+
hsa-miR-873-5p
chr9
28888925
28888945
-
hsa-miR-1286
chr22
20249145
20249165
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005083.1
chr7
20217577
20221700
+
AC016876.2
chr17
7581964
7584086
-
AC021078.1
chr5
149494314
149504670
-
AC026362.1
chr12
122975320
122982907
+
AC069281.2
chr7
100572232
100578700
-
AC079781.5
chr7
97851688
97972985
-
AC105036.3
chr15
75527150
75601205
-
AC245014.3
chr1
145281116
145281462
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.