Entry Detail


General Information

Database ID:exR0450613
RNA Name:HDGFL3
RNA Type:mRNA
Chromosome:chr15
Starnd:-
Coordinate:
Start Site(bp):83112738End Site(bp):83207823
External Links:ENSG00000166503



Disease Information

Disease Name:
Disease Category:
MeSH ID:
Type:
Alias:



Expression Detail

GEO ID:GSE122377
Description:Tuberculous Meningitis in Pediatric Patients [CSF]
Experimental Design:Disease Sample Source
Case Disease Type:Pediatric TB meningitis
Case Disease SubType:NA
Case Sample:Ventricular Cerebrospinal Fluid
Control Sample:Lumbar Puncture Cerebrospinal Fluid
Number of Case:12
Number of Control:12
Number of Samples:24





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA2
chr9
137007234
137028922
-
AC010422.3
chr19
12643831
12648397
-
ACO2
chr22
41469117
41528989
+
ADAM11
chr17
44758988
44781846
+
ADSL
chr22
40346500
40390463
+
AFTPH
chr2
64524305
64593005
+
AL022238.4
chr22
40346529
40410054
+
AL136454.1
chr1
192716132
192716653
+
AL136531.2
chr20
1317571
1393096
-
AL358113.1
chr9
69035747
69255187
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC024270.3
chr15
83113617
83114566
-
AC090114.2
chr7
128524016
128531069
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:31434901
Title:Tuberculous meningitis in children is characterized by compartmentalized immune responses and neural excitotoxicity
Author:Rohlwink UK, Figaji A, Wilkinson KA, Horswell S, Sesay AK, Deffur A, Enslin N, Solomons R, Van Toorn R, Eley B, Levin M, Wilkinson RJ, Lai RPJ
Journal:Nat Commun. 2019 Aug 21;10(1):3767.
Description:Differential transcript expression of TBM cases are compared with healthy controls in whole blood and with non-TB cerebral infection controls in CSF.